4M – Diversity & maintenance of life

Supporting article M: The discovery of new species and its contribution to genetic diversity and maintaining life on earth. An extensive scientific report.

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656167/

Proc Natl Acad Sci U S A. 2009 March 10; 106(10): 3841–3846.
Published online 2009 February 19. doi: 10.1073/pnas.0812419106.

PMCID: PMC2656167
Copyright notice
Environmental Sciences
Gerardo Ceballosa1 and Paul R. Ehrlichb1
aDepartamento de Ecología de la Biodiversidad, Instituto de Ecología, Universidad Nacional Autonoma de Mexico, AP 70-275, México, D.F. 04510, México; and
bDepartment of Biological Sciences, Center for Conservation Biology, Stanford University, Stanford, CA, 94305
To whom correspondence may be addressed. E-mail: gceballo@ecologia.unam.mx or ; Email: pre@stanford.edu
Contributed by
Contributed by Paul R. Ehrlich, December 21, 2008
.Contributed by
Author contributions: G.C. and P.R.E. designed research, performed research, analyzed data, and wrote the paper.
Received November 3, 2008
Discoveries of new mammal species and their implications for conservation and ecosystem services

In light of recent discoveries of many new species of poorly-studied organisms, we examine the biodiversity of mammals, a well known “charismatic” group. Many assume that nearly all mammal species are known to scientists. We demonstrate that this assumption is incorrect. Since 1993, 408 new mammalian species have been described, ≈10% of the previously known fauna. Some 60% of these are “cryptic” species, but 40% are large and distinctive. A substantial number persist only in areas undergoing rapid habitat destruction. Our findings suggest global animal and plant species diversity is badly underestimated even in well studied taxa. This implies even greater threats to ecosystem services and human well-being than previously assumed, and an increased need to explore, understand, and conserve Earth’s living resources.

Today biology is in “a new age of discovery”. That age is characterized by the uncovering of vast new elements of biodiversity, which are the fundamental building blocks of ecosystems, and thus the provision of ecosystem goods and services. There are thousands of examples of unexpected discoveries of new taxa across broad taxonomic and geographic spectra, from extremophile bacteria in Yellowstone geysers to whole new ecosystems in the Pacific Ocean hydrothermal vents. For example, the Census of Marine Life program has uncovered hundreds of new species. Similarly, recent work has shown that a “species” of skipper butterfly, Astraptes fulgerator was actually a complex of 10 species with distinct life histories, and that 16 species of “generalist” tropical parasitoid tachinid flies were actually 73 evolutionary lineages (as indicated by mitochondrial DNA barcoding) including many lineages specialized to attack different hosts.

These findings are of much more than academic interest. Most of the focus in conservation has been on trying to preserve as much of species diversity as possible. Although the equally critical need for population preservation is now recognized, the diversity of species remains crucial as a source of populations that can assume more distinct ecological roles (e.g., as generalist or specialist predators) in a rapidly changing world. Previously unrecognized genetic diversity must therefore be evaluated so that biologists have some idea of what they must strive to preserve, and how to deploy their limited resources to reduce biodiversity loss.

Here, we evaluate discoveries of new species of mammals, an especially well-studied group. We first give the methods by which new mammalian diversity has been discovered. Then we review the taxonomic affiliations, range size, and patterns of geographic distribution of mammal species described since a comprehensive 1993 checklist. Finally, we discuss the significance of these findings for the status of biodiversity in general, the problems of maintaining it, and thus of the ecosystem services that depend upon that diversity.

What are the ways in which additional mammal diversity has been uncovered? We started with a thorough search for new species of mammals and created maps for all new species except for marine ones, from the literature. Global patterns of species distribution were done using 10,000-km2 grid cells, similar to our previous studies. The new mammal species we found were of three types. The first was morphologically distinct species found in previously poorly surveyed areas. The second, the result of using molecular genetic techniques, was discoveries that the geographic range of a well-known organism was actually the combined ranges of two or more cryptic species—one’s not easily recognized by morphological features. The third type consists of species that had been considered subspecies and were newly elevated to specific status (again, often as the result of molecular genetic discoveries). Two of the most prominent recent cases involved giving specific status to populations of forest elephants in central Africa and orangutans in Borneo.

In this article we will deal only with the first two cases—if the third were considered we would be dealing with >1000 “new” species. We did not map new species of marine mammals, which include whales and dolphins. Even 250 years after taxonomists started formally naming new mammals, 408 new species (excluding those elevated subspecies), have been documented in the last 15 years, a surprisingly large number considering <4,800 mammal species had been described at the beginning of that period. The discoveries include 18 new genera such as a large bovid (Pseudoryx), a rodent (Cuscomys), a bat (Xeronycteris), and a primate (Rungwecebus), and a living representative of Diatomyidae, a family considered extinct for 11 million years.

The new species belong to 18 mammalian orders. The newly-discovered species varied in size from a 3-g shrew-tenrec (Microgale jobihely) to the 100-kg soala antelope (Pseudoryx nghetinhensis), and include some remarkable creatures such as a pygmy sloth (Bradypus pygmaeus) from a Panamanian island, a “giant” muntjac (Megamuntiacus vuquangensis) from Vietnam, a white titi monkey (Callithrix mauesi) from a river near Manaus in Brazil, and the Solomons islands monkey-faced bat (Pteralopex taki). The number of new species among orders was not random, i.e., related to the order’s total species richness. It was higher than expected for Primates, Chiroptera, Rodentia, and all orders that used to belong to marsupials; in contrast, it was less than expected in Soricomorpha, Artiodactyla, and Carnivora (χ2 goodnes of fit between expected and observed speciess richness order; X(2) = 40.32, df = 12, P < 0.001).

The discovery of some of these species has generated considerable interest within the scientific community. For example, both the recently described rodent species from the family Diatomyidae and genus Cuscomys were already known from paleontological and prehistoric remains, respectively. This is an instance of the “Lazarus effect”—in which an organism known only from fossils is discovered alive. Remarkably, the diatomid species (Laonastes aenigmamus) and a new rabbit species (Nesolagus timminsi) were first discovered being sold as food in a market in a Laotian village.

It appears that exploration of new regions has been the main factor for the discovery of as much as 40% of the new species, such as the pygmy deer (Muntiacus putaoensis) in Bhutan, the Arunachal macaque (Macaca muzala) from the Himalaya foothills of northeast India, the Amazonian basin monkeys, and most of the new Philippines species. The exploration of new regions has been based on both the use of either new techniques such as camera-traps, which were the first indication that there was a new giant elephant shrew (Rhynchocyon udewensis) in Tanzania, or traditional techniques, such as pitfall traps, which have yielded specimens of 8 new species of shrew-tenrecs from Madagascar since 1988. Molecular techniques have revealed cryptic species across many orders. For bats and galago monkeys, discriminating among echolocation signals and vocalizations respectively have been key to identifying cryptic species.

The patterns of distribution of new species are shown in, based on a global grid of some 17,000 10,000-km2 terrestrial cells. The number of new species in a single cell varied from 1 to 10. New species have been discovered on all continents except Antarctica, with the majority in South America and Asia.

In the Americas, cells with one or two new species occur in temperate regions of Alaska, the eastern U.S., Chile, and Argentina, whereas cells with two species or more have been found throughout tropical and semitropical regions in Mexico and Central America, eastern Colombia, Peru and Ecuador, the Amazon basin, and the Atlantic forests of Brazil. Most new species on this continent are bats and primates.

In Africa, most new species have been discovered in tropical regions, but some species have been found in arid regions in Western Sahara and Namibia; discoveries have been concentrated in eastern tropical forests of west Africa and the Congo Basin, from Liberia to Angola, the eastern mountains of Somalia, Kenya, and Tanzania, and Madagascar, where up to 3 new species have been discovered in some cells. Surprisingly, several new species have been discovered in Europe, mostly around the Mediterranean basin. New species in Asia are concentrated in the Malayan Peninsula, Indonesia, and New Guinea. The number of new species discovered in Philippines is rather remarkable.
On average these species had ranges of ≈87,000 km2, significantly smaller compared with an average land mammal range of 400,000 km2 (P < 0.0001). Indeed, 81% of the new species have very restricted ranges [i.e., <10,000 km2, which make them more prone to extinction. Interestingly, the distribution of newly discovered mammals often includes large areas not considered biodiversity hotspots, which further indicates that conservation strategies to supplement the focus on hotspots are required. Also interesting, and unexpected, is that the new mammal species were larger than average (P < 0.0001). This is primarily because few of the newly discovered species were either bats or rodents.

Although most (61%, 1640) of the cells where new species have been found have relatively little anthropogenic threat, measured as both the area of the cell under agriculture and human population, 24% of the cells are located in cells with >10% of their land area under agriculture, including 12% of cells with >50% of agriculture.

In contrast, most (46%) cells are in regions with low human population density [< 10 individuals per square kilometer; however, >20% are found in regions with relatively high human populations, indicating higher vulnerability. A very interesting example is the mammalian fauna discovered in a limestone karts outcrop in the the Kammaouan province, in the Lao People’s Democratic Republic, which included a new family and 6 species, in a region completely isolated by agriculture.

The discoveries of new mammals are hardly unique. Our analysis supports the anecdotal conclusions from butterflies, flies, and other organisms mentioned above. It suggests that other prominent taxa (e.g., birds and reptiles), and more obscure groups, likely contain many more species than are currently described. This could amount to millions of species and other distinct entities, greatly expanding estimates of the diversity of the living elements of Earth’s natural capital, to even perhaps hundreds of millions of species. In addition, because 12% of Earth’s land surface is used for crop agriculture, 25% is grazed by livestock, 2% has been paved or built on, 30% is exploited in other ways, our results suggest that many more unheralded organisms in all groups have likely recently gone extinct without being noticed. That implies that the levels of species extinction overall have been grossly underestimated. Thus, the situation is likely even worse than indicated by the steady rise of endangerment in the IUCN mammal statistics (8). Although it is common for estimates of total current plant and animal biodiversity to be in the tens of millions, those estimates are largely based on rates of discovery of morphologically defined species found in traditional surveys.
The problem of cryptic biodiversity, and the incompleteness of inventories of even charismatic organisms, is not usually considered. This is especially likely because the species now being discovered, as illustrated by mammals, tend to have limited distributions. For instance, the golden capuchin monkey (Cebus queirozi) was described in 2006, and is known to occur in a 200 ha remnant forest patch, isolated by sugar cane plantations. Similarly, the Solomon Islands flying fox (Pteralopex taki) was described in 2002 from 3 islands, and was already extinct on one of them.

The lemur genus Microcebus, thought to consist of two species in 1982, has now been shown to comprise ≈13 cryptic species. It, of course, may have once contained many other cryptic species, all of which went extinct unheralded. This seems likely, considering the massive deforestation that has occurred on Madagascar and the inconspicuous character of many lemurs.

Population loss is also largely unrecorded, except when a well-defined subspecies goes extinct, as in the case of the satyrine butterfly Cercyonis sthenele sthenele that famously disappeared in the 1880s from San Francisco sand dune habitats or the more recent loss of the Caspian, Balinese, and Javan tiger subspecies (Panthera tigris virgata, P. t. balica, P. t. sondaica) and the well-publicized near extinctions of the Asian cheetah (Acinonyx jubatus venaticus) and Florida panther (Puma concolor coryi). In short, there has probably been substantial cryptic loss of population biodiversity over much of the planet even in well-studied groups.

Several commentators have suggested that the discovery of “new species” is problematic for conservation—especially “taxonomic inflation” (raising of subspecies to specific status and uncovering of cryptic species) We and others disagree. There is little need to focus on taxonomic rank when what needs to be preserved are the numbers and diversity of biological entities. For example, it is important to know that most tachinid flies in Costa Rica are host specialists. Whether they are counted as “good species” or “mitochondrial lineages” makes no scientific difference. Conserving one of those tachinid lineages, for instance, may preserve a crucial biological control agent. The key thing is that in an ideal world we should conserve all such units, regardless of appellation, keeping the loss rate not significantly above the “background” rate.

Many newly discovered entities may supply previously unrecognized ecosystem services. For example, a recent study has shown that the abundance of a hantavirus-prone rodent species and hantavirus infection rates are negatively correlated with the number of native rodent species in Panamanian tropical forests. Loss of such native taxa can thus potentially have negative effects on human health and welfare. Furthermore, the role of large mammals in regulating the trophic and architectural properties of ecosystems has become even clearer with the recent investigations of the impacts of large herbivores. Such results underscore the often-neglected point that conserving biodiversity over broad areas is essential to maintaining ecological function and critical ecosystem services.

However, no one is in a position to decide the full conservation value of any species, charismatic or not, let alone the other more or less distinct entities now being revealed. This moves the “rivet popper hypothesis” to a new level. Scientists know that there is some functional redundancy in the species composition of most ecosystems. However, the level of that redundancy may be generally overrated, as research on the buffering of ecosystem processes by diversity demonstrates. In response to these problems, what should be the strategy of conservation biologists? It goes without saying that they should try to preserve as many genetically distinct species as possible. It is also crucial that the number and diversity of populations—many of which are clearly more genetically and ecologically differentiated than previously thought—and the ecosystem services they provide, also be preserved and, where possible, restored. The whole issue of triage needs to be revisited—triage decisions may be required, but they will involve vast scientific, socioeconomic, and political uncertainties. Also vexed will be issues of “where to draw the line” (because most individuals are genetically distinct and we can not preserve everything). The more diversity that is discovered the more urgent becomes putting additional resources into understanding and finding ways to conserving it. The insufficiency to date of ethical and esthetic arguments for preserving biodiversity means that ecosystem service based approaches, typified by countryside biogeography and the Natural Capital Project, must be expanded. This is especially the case in the face of increasing threats to virtually all organisms, which are experiencing rapid climate, land conversion, and extensive toxic pollution—threats that now extend to areas previously considered protected, of marginal value, or remote.